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BDU Bioinformatics Sem-III
No Units Titles Sub Titles Chapters
1 Unit 1 Biological Databases Sequence databases - Nucleic Acid sequence Databases- Genbank ,Protein Sequence Databases- Swiss Prot, Searching Sequence Databases - Nonredundant Databases - Low Annotation Databases - Specialized sequence Databases - Structural Databases - Motif Databases - Genome Databases - Proteome Databases VIEW CHAPTERS
2 Unit 2 Tools for Bioinformatics Pairwise alignment - Dotplots - scoring matrices - Blosum Matrices - PAM Matrix - Gap Penalty - Alignment Algorithms- Needleman - Wunsch Global Alignment Algorithm , Smith - Waterman Local Alignment Algorithm VIEW CHAPTERS
3 Unit 3 Pairwise Sequence Analysis Tools BLAST- Steps involved in using BLAST - Interpreting BLAST results, FASTA - Alignment Scores -Multiple Alignment - ClustalW - Phylogenetic Tree - Sequence Analysis using EMBOSS VIEW CHAPTERS
4 Unit 4 Protein Structure Prediction Secondary structure Prediction -PDB-FSSP-SCOPCATH- Chou-Fasman - Jpred - Q3 - Transmembrane protein prediction - Tertiary structure prediction - Comparative Modelling - Fold recognition - Ab initio prediction - modeler - RASMOL VIEW CHAPTERS
5 Unit 5 Emerging Areas of Bioinformatics DNA microarrays - Structural genomics -Functional Genomics - Proteomics Comparative Genomics - Phylogeny - Whole Cell Simulation -Human Genome Project- Systems biology - Biodiversity informatics VIEW CHAPTERS
 
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